Yes, remove or bypass, but in some cases you will not be able to use the batteries in the tools their are intended for anymore.
But why would you make your life more difficult than it needs to be?
Task: Check and charge power tool batteries
HowTo, step by step:
1. Measure voltage across the main terminals, sort them into two groups: a) Dead batteries, voltage between 0V and 12.5V and b) Good batteries, voltage over 12.5V
Assuming 12.5V as the threshold here, this is just a rough estimate as it will differ from manufacturer to manufacturer what they think is a acceptable.
2a. These are our assumed dead batteries, decide what you want to do with them, i.e. do you want to rescue it or not.
If no, then disassemble the battery to reclaim the cells.
If yes, then disassemble the battery case. See if it uses a BMS, like Makita. If it does then you might have to replace the BMS and they tend to disable the outputs and this can't be undone. Probably not worth it, but you can reclaim the cells. If it doesn't use a BMS, check the voltages of the individual cells. See if you can get access to the individual cells with croc clips or something similar. If not, attach temporary wires.
Then recharge the cells, you will need an adjustable bench power supply for this, especially if the voltage is very low or even 0V. You have to carefully recharge the cells with very low current, like 10mA. If the cell was 0V, see if it holds the charge, i.e. charge it to 1.0V, detach the power supply and see if the voltage drops back to 0V or if it stays above 0V. If it stays then you can continue, if not then you have to decide whether you want to replace the dead cells.
Once back up to voltage, like 2.5V per cell at least, you can charge with any charger through the main terminals. Be aware that this is not a balance charge, make sure you start with the same voltage on all cells and don't charge to 4.2V on the first attempt, go for 4.1V instead and monitor the cell voltages constantly. Being undervoltage cells they might start drifting.
2b. The good ones will charge on the original chargers., the ones you don't have. Consider getting them, usually used ones can be found pretty cheap.
If the batteries don't have BMS they can also be charged through their main terminals with any charger. Same procedure as on the final step of 2a, charge and monitor.
3. The ones you do not want or cannot rescue can be disassembled to reclaim the individual cells. Testing procedure can be found all over the forum but it needs to be adjusted for high drain power tool cells. Check the models of cells you're getting, charging and discharging at 1A will probably not be enough to actually test the cells. You need more current.